CASOL Comprehensive Annotation System Of LncRNAs

Current version 3.0

Data file format
Project Description Species Download Date
BIGTranscriptome Human BIGTranscriptome lncRNAs (link) Homo sapiens (hg19) GTF July 16, 2019
Human BIGTranscriptome + GENCODE(v19) lncRNAs GTF
Human ESCC novel lncRNAs (Esophageal Squamous Cell Carcinoma; ESCC) GTF
Human HCC novel lncRNAs (Hepatocellular Carcinoma; HCC) GTF
Mouse embryo stem cell novel lncRNAs Mus musculus (mm9) GTF


Project Description Species Download Date
Reference genome and transcriptome maps of Korean native livestocks Chicken lncRNAs are identified from black chicken (Yeonsan Ogye). Gallus gallus (Ogye ver1.0) GTF Oct. 30, 2017
Horse lncRNAs are identified from Jeju horse (Jejuma). Equus caballus (Jejuma ver0.1) GTF
Duck lncRNAs are identified from Korean native duck. Anas platyrnynchos (Korean native duck scaffold ver1.0) GTF
Dog lncRNAs are identified from Jindo dog. Canis lupus familiaris (Jindo_1) GTF



Archive


Version Description Species Download Date
Version 2.0 Human lncRNAs are updated and filtered from GENCODE and LNCipedia database by the following workflow. Homo sapiens (hg19) GTF Nov. 29, 2015
Mouse lncRNAs are updated and filtered from GENCODE database by the following workflow. Mus musculus (mm9) GTF
Version 1.1 Human and mouse lncRNAs are updated and filtered from GENCODE database by the following workflow. Homo sapiens (hg19) GTF April 07, 2015
Mus musculus (mm9) GTF
Version 1.0 Human and mouse lncRNAs filtered from GENCODE database by the workflow. Homo sapiens (hg19) GTF Aug. 21, 2014
Mus musculus (mm9) GTF