About TERIUS
TERIUS is a program designed to differentiate between long non-coding RNAs and transcripts with coding potential or transcripts that are actually 3’UTR fragments of mRNAs. TERIUS distinguishes these transcripts using two-step filtration process from bona fide lncRNAs.
Using TERIUS
TERIUS is written using Python in Linux CentOS 6.0 environment. It requires Ribo-seq, UPF1 CLIP-seq and RNA-seq for high-throughput sequence data, and an annotation file of the transcripts in question in refFlat format.
Citing TERIUS
Choi, SW., Nam, JW. TERIUS: accurate prediction of lncRNA via high-throughput sequencing data representing RNA-binding protein association. BMC Bioinformatics 19 (Suppl 1), 41 (2018). https://doi.org/10.1186/s12859-018-2013-9
Contact
Please contact Seo-Won Choi (seowonc@gmail.com) for inquiries regarding TERIUS
TERIUS 